WIP: Struggling to slide through pipeline (I)
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@ -55,31 +55,32 @@
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<states id="texte" date="1630000000" author="Here, states are spaces.">
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<space id="initial" date="1630000000" author="Une souris verte,">
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<arrow site="0" weight="8" x="0"/>
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<arrow site="0" weight="6" x="0"/>
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<arrow site="1" weight="1" x="0"/>
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<arrow site="2" weight="7" x="1"/>
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<arrow site="1" weight="1" x="6"/>
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<arrow site="1" weight="3" x="6"/>
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<arrow site="2" weight="1" x="7"/>
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<arrow site="1" weight="4" x="14"/>
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<arrow site="0" weight="8" x="14"/>
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<arrow site="2" weight="5" x="15"/>
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<arrow site="1" weight="2" x="17"/>
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<arrow site="2" weight="7" x="18"/>
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<arrow site="2" weight="4" x="20"/>
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<arrow site="2" weight="9" x="20"/>
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<arrow site="0" weight="4" x="20"/>
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</space>
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</states>
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<!-- Model transitions definition (rules) -->
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<!-- In this version : <xs:sequence minOccurs="0" maxOccurs="unbounded">-->
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<!-- In this version : <xs:sequence minOccurs="1" maxOccurs="unbounded">-->
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<!-- Transitions should be edited by hand and written in a 'human-readable' format -->
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<conditions id="random walk of dimers" date="1630000000" author="Zazard le lézard !">
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<condition site="1" weight="1" node_id="1" parent="0" x="0"/>
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<condition site="2" weight="1" node_id="2" parent="1" x="1"/>
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<!-- as soon as conditions 1 and 2 are satisfied, a dimer is identified at atation (0,1). -->
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<!-- as soon as conditions 1 and 2 are satisfied, a dimer is identified at location (0,1). -->
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<condition site="1" weight="0" node_id="3" parent="2" x="2"/>
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<!-- as soon as condition 3 is satisfied,
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@ -170,7 +170,7 @@
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<xs:element name="conditions">
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<xs:complexType>
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<xs:sequence minOccurs="0" maxOccurs="unbounded">
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<xs:sequence minOccurs="1" maxOccurs="unbounded">
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<xs:element minOccurs="0" ref="quote"/>
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<xs:element ref="condition"/>
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</xs:sequence>
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@ -180,7 +180,7 @@
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<xs:element name="transitions">
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<xs:complexType>
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<xs:sequence minOccurs="0" maxOccurs="unbounded">
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<xs:sequence minOccurs="1" maxOccurs="unbounded">
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<xs:element ref="transition"/>
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</xs:sequence>
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</xs:complexType>
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Binary file not shown.
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@ -1,9 +1,9 @@
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import model
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from anytree import Node, AnyNode, NodeMixin, RenderTree, find_by_attr
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from anytree.exporter import DotExporter
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from ete3 import Tree
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# from anytree import Node, AnyNode, NodeMixin, RenderTree, find_by_attr
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# from anytree.exporter import DotExporter from ete3 import Tree
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# https://stackoverflow.com/questions/51902250/read-data-from-a-file-and-create-a-tree-using-anytree-in-python
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# https://stackoverflow.com/questions/51902250/
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# read-data-from-a-file-and-create-a-tree-using-anytree-in-python
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# https://www.delftstack.com/howto/python/trees-in-python/
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# https://python-gtk-3-tutorial.readthedocs.io/en/latest/treeview.html
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# https://anytree.readthedocs.io/en/latest/
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@ -14,48 +14,50 @@ from ete3 import Tree
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conditions_set = set()
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for i in range (0, len(model.testmodel.get_conditions().get_conditions_array())):
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# TODO cnd.get_coord("y"),...
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for i in range(0, len(model.testmodel.get_conditions().get_conditions_array())):
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cnd = model.testmodel.get_conditions().get_condition(i)
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conditions_set.add((cnd.get_node_self_id(),
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cnd.get_node_parent_id(),
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cnd.get_coord("x"),
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# TODO cnd.get_coord("y"),...
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cnd.get_site(),
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cnd.get_weight()))
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class TreeNode(object):
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# TODO self.y = y,...
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def __init__(self, id, parent, x, site, weight):
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self.id = id
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self.parent = parent
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self.ch = []
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self.x = x
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# TODO self.y = y,...
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self.site = site
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self.weight = weight
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def id(self): return id
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def id(self):
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return id
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def add_child(self,ch_id):
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def add_child(self, ch_id):
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self.ch.append(ch_id)
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self.ch = sorted(self.ch, key=id)
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l = []
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lll = []
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for i in conditions_set: # sorted(conditions_set, key=id):
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cndt = TreeNode(i[0], i[1], i[2], i[3], i[4]) # TODO y,z,...
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l.append(cndt)
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lll.append(cndt)
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for i in l:
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for j in l:
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for i in lll:
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for j in lll:
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if (i.id == j.parent):
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i.add_child(j)
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print('\n',"Liste des conditions (node_id, parent_id, nb d'enfants, +/- liste des enfants)",'\n')
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print('\n', "Liste des conditions (node_id, parent_id, nb d'enfants, +/- liste des enfants)", '\n')
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affichage = ''
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for i in l:
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for i in lll:
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affichage = str(i.id) + ' ' + str(i.parent) + ' n=' + str(len(i.ch)) + ' '
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if len(i.ch) > 0:
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for c in range (0, len(i.ch)):
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@ -63,10 +65,8 @@ for i in l:
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print(affichage)
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##
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"""
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A = Node("A")
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A1 = Node("A1", parent=A)
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A2 = Node("A2", parent=A)
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@ -74,7 +74,7 @@ A21 = Node("A21", parent=A2)
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root = Node([0])
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"""
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https://python-gtk-3-tutorial.readthedocs.io/en/latest/treeview.html
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@ -95,8 +95,6 @@ with open('input.txt', 'r') as f:
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for pre, _, node in RenderTree(root):
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print("%s%s" % (pre, node.name))
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"""
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##
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@ -105,13 +103,19 @@ with open('input.txt', 'r') as f:
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##
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print("\n*** Conditions tree ***")
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print(type(model.testmodel.get_conditions()))
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print("\n")
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print(model.testmodel.get_conditions().get_condition(0).get_coord('x'))
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print("\n")
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print()
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sp = model.testmodel.get_states().get_space(0)
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size = model.testmodel.get_parameters().spaceparam.get_dimension().get_x()
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nb_sites = int (model.testmodel.get_parameters().spaceparam.get_site_multiplicity())
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nb_arrows = int (model.testmodel.get_states().get_space(0).get_nb_arrows())
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nb_sites = int(model.testmodel.get_parameters().spaceparam.get_site_multiplicity())
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nb_arrows = int(model.testmodel.get_states().get_space(0).get_nb_arrows())
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print()
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print("space size = ", size, " nb de sites par cellule = ", nb_sites,
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" nb total de flèches dans l'espace = ", nb_arrows)
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print(' | ',end=' ')
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@ -126,19 +130,20 @@ print(' | ',end=' ')
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# 2) pas de node sans un node_parent_id
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for n in range (0, size + 1):
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for s in range (0, nb_sites):
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for n in range(0, size + 1):
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for s in range(0, nb_sites):
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arr = 0
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for a in range (0, nb_arrows):
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if (sp.get_arrow(a).get_coord("x") == n and sp.get_arrow(a).get_site() == s):
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for a in range(0, nb_arrows):
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if (sp.get_arrow(a).get_coord("x") == n
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and sp.get_arrow(a).get_site() == s):
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arr = sp.get_arrow(a).get_weight()
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if arr > 0:
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print(str(arr),end=' ')
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else:
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print('.',end=' ')
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print(' | ',end=' ')
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print('\n ',end=' ')
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print('\n ' + ' ' * nb_sites * 2,end='')
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for k in range (0, size + 1):
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if k < 9: print(k+1,end=' ')
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else: print(k+1,end=' ')
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for k in range(0, size + 1):
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if k < 9: print(k+1,end=' '+ ' ' * nb_sites * 2)
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else: print(k+1,end=' '+ ' ' * nb_sites * 2)
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29
src/model.py
29
src/model.py
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@ -279,8 +279,27 @@ class States:
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def get_space(self, i):
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return self.__space[i]
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## Conditions
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## Conditions Tree
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class TreeNode(object):
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def __init__(self, id, parent, x, site, weight):
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self.id = id
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self.parent = parent
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self.ch = []
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self.x = x
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# TODO self.y = y,...
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self.site = site
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self.weight = weight
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def id(self): return id
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def add_child(self,ch_id):
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self.ch.append(ch_id)
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self.ch = sorted(self.ch, key=id)
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## Conditions
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class Condition:
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def __init__(self, node):
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@ -387,7 +406,6 @@ class Arrow:
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def set_weight(self, weight):
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self.node.attrib["weight"] = str(weight)
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class Model:
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def __init__(self, modelpath, schemapath):
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@ -430,6 +448,9 @@ class Model:
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def get_states(self):
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return States(self.__states)
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def get_tree(self):
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return self.tree
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def get_conditions(self):
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return Conditions(self.__conditions)
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@ -440,8 +461,8 @@ class Model:
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self.tree.write("../models/" + name + ".xml", encoding="utf-8")
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modelPath = "../models/dimers random walk.xml"
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schemaPath = "../schemas/models_0.2.1.xmls"
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modelPath = "../models/dimers random walk.automat.xml"
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schemaPath = "../schemas/models_0.2.1.automat.xmls"
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testmodel = Model(modelPath, schemaPath)
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