gem-graph-server/debian/var/models/XML model example (in progress)

<?xml version="1.0" encoding="UTF-8"?>
<gem-graph-model>

    <identity>
       <anything_but_not_just_the_word_name>Modèle de test</anything_but_not_just_the_word_name>
       <name value="(Trois dimères)"/>
       <owner>2</owner>
       <date>1629830000</date>
       <version>1.0</version>
    </identity>

    <parameters id="0" date="0" author="Gaston Lagaffe">

        <modelization>
            <max_thread value="0"/>
            <max_cycles value="13"/>
        </modelization>

        <space>
            <dimension value="1"/>
            <size value="39"/>
            <site_multiplicity value="2"/>
            <boundaries/>
        </space>

    </parameters>

    <objects id="A list of connex states" date="1629830000" author="Jean Sirmai">

        <state id="dimer 1-1" date="1629830000" author="Jean Sirmai">
            <arrow x="0" y="0" z="0" site="1" weight="1"/>
            <arrow x="1" y="0" z="0" site="0" weight="1"/>
        </state>

        <state id="dimer 2-2" date="1629830000" author="Jean Sirmai">
            <arrow x="0" y="0" z="0" site="1" weight="2"/>
            <arrow x="1" y="0" z="0" site="0" weight="2"/>
        </state>

        <state id="dimer 3-3" date="1629830000" author="Jean Sirmai">
            <arrow x="0" y="0" z="0" site="1" weight="3"/>
            <arrow x="1" y="0" z="0" site="0" weight="3"/>
        </state>

        <!-- Just for the fun !  Can you imagine a rules in a next model ? -->
        <state id="dimer 1-2" date="1629830000" author="Jean Sirmai">
            <arrow x="0" y="0" z="0" site="1" weight="1"/>
            <arrow x="1" y="0" z="0" site="0" weight="2"/>
        </state>

    </objects>

    <state id="initial state" date="1629830000" author="Jean Sirmai">
    <!-- three dimers of three types (1-1, 2-2, 3-3) are defined in three locations-->

        <arrow x="0"  y="0" z="0" site="1" weight="1"/>
        <arrow x="1"  y="0" z="0" site="0" weight="1"/>

        <arrow x="10" y="0" z="0" site="1" weight="2"/>
        <arrow x="11" y="0" z="0" site="0" weight="2"/>

        <arrow x="20" y="0" z="0" site="1" weight="3"/>
        <arrow x="21" y="0" z="0" site="0" weight="3"/>

    </state>

    <produced_states id="a computed state" date="000" author="THE MATRIX (you know it...)">
    </produced_states>

    <transitions id="how many ?" date="000" author="THE SUPER MATRIX (you did'not know it ? Did you ?...)">

    <transition id="0" date="1629830000" author="Jean Sirmai" probability="1">   <!-- moves a dimer to east-->
      <state id="initial transition state" date="0" author="Jean Sirmai">
        <arrow x="0" y="0" z="0" site="1" weight="1"/>
        <arrow x="1" y="0" z="0" site="0" weight="1"/>      <!-- a dimer is identified-->
                                                            <!-- the local space origin is its "west" particule-->
        <arrow x="2" y="0" z="0" site="1" weight="0"/>      <!-- the east location next this dimer is empty-->
        <arrow x="3" y="0" z="0" site="0" weight="0"/>      <!-- In this very simple model, I do not need to check this condition-->

      </state>

      <state id="final transition state" date="0" author="Jean Sirmai">                                                <!-- Therefore I can (and I want to) move it to its next east location-->
        <arrow x="0" y="0" z="0" site="1" weight="0"/>
        <arrow x="1" y="0" z="0" site="0" weight="0"/>      <!-- The identified dimer no more exists  ( :-(( -->
        <arrow x="1" y="0" z="0" site="1" weight="1"/>
        <arrow x="2" y="0" z="0" site="0" weight="1"/>      <!-- Happily, it is now rebuilt at its east location  ( ;-))-->

      </state>

    </transition>


    </transitions>

    <ref></ref>

    <quote></quote>

</gem-graph-model>